GrippeAllemagneV3, Main, Exploration, bibRecord, 000198

Reassortants of the pandemic (H1N1) 2009 virus and establishment of a novel porcine H1N2 influenza virus, lineage in Germany.

Identifieur interne : 000198 ( Main/Exploration ); précédent : 000197; suivant : 000199

Reassortants of the pandemic (H1N1) 2009 virus and establishment of a novel porcine H1N2 influenza virus, lineage in Germany.

Auteurs : Jeannette Lange [Allemagne] ; Marco Groth ; Michael Schlegel ; Andi Krumbholz ; Kerstin Wieczorek ; Roswitha Ulrich ; Simone Köppen ; Katrin Schulz ; Dorit Appl ; Hans-Joachim Selbitz ; Andreas Sauerbrei ; Matthias Platzer ; Roland Zell ; Ralf Dürrwald

Source :

Veterinary microbiology [ 1873-2542 ] ; 2013.

RBID : pubmed:24139631

Descripteurs français

KwdFr :
- Allemagne (épidémiologie), Animaux, Anticorps antiviraux (sang), Antigènes viraux (génétique), Données de séquences moléculaires, Infections à Orthomyxoviridae (médecine vétérinaire), Infections à Orthomyxoviridae (virologie), Infections à Orthomyxoviridae (épidémiologie), Maladies des porcs (virologie), Maladies des porcs (épidémiologie), Phylogénie, Sous-type H1N1 du virus de la grippe A (), Sous-type H1N1 du virus de la grippe A (génétique), Sous-type H1N2 du virus de la grippe A (), Sous-type H1N2 du virus de la grippe A (génétique), Suidae, Virus recombinants (), Virus recombinants (génétique), Études séroépidémiologiques.
MESH :
- génétique : Antigènes viraux, Sous-type H1N1 du virus de la grippe A, Sous-type H1N2 du virus de la grippe A, Virus recombinants.
- médecine vétérinaire : Infections à Orthomyxoviridae.
- sang : Anticorps antiviraux.
- virologie : Infections à Orthomyxoviridae, Maladies des porcs.
- épidémiologie : Allemagne, Infections à Orthomyxoviridae, Maladies des porcs.
- Animaux, Données de séquences moléculaires, Phylogénie, Sous-type H1N1 du virus de la grippe A, Sous-type H1N2 du virus de la grippe A, Suidae, Virus recombinants, Études séroépidémiologiques.

English descriptors

KwdEn :
- Animals, Antibodies, Viral (blood), Antigens, Viral (genetics), Germany (epidemiology), Influenza A Virus, H1N1 Subtype (classification), Influenza A Virus, H1N1 Subtype (genetics), Influenza A Virus, H1N2 Subtype (classification), Influenza A Virus, H1N2 Subtype (genetics), Molecular Sequence Data, Orthomyxoviridae Infections (epidemiology), Orthomyxoviridae Infections (veterinary), Orthomyxoviridae Infections (virology), Phylogeny, Reassortant Viruses (classification), Reassortant Viruses (genetics), Seroepidemiologic Studies, Swine, Swine Diseases (epidemiology), Swine Diseases (virology).
MESH :
- chemical , blood : Antibodies, Viral.
- chemical , genetics : Antigens, Viral.
- classification : Influenza A Virus, H1N1 Subtype, Influenza A Virus, H1N2 Subtype, Reassortant Viruses.
- epidemiology : Germany, Orthomyxoviridae Infections, Swine Diseases.
- genetics : Influenza A Virus, H1N1 Subtype, Influenza A Virus, H1N2 Subtype, Reassortant Viruses.
- veterinary : Orthomyxoviridae Infections.
- virology : Orthomyxoviridae Infections, Swine Diseases.
- Animals, Molecular Sequence Data, Phylogeny, Seroepidemiologic Studies, Swine.

Abstract

The incursion of pandemic (H1N1) 2009 virus (pdmH1N1) into the German pig population was investigated in a serosurvey and by virological means between June 2009 and December 2012. Analysis of 23,116 pig sera from a total of 2,666 herds revealed 224 herds that reacted with pdmH1N1 but not with the prevalent avian-like H1N1 swine influenza virus. Sixty-six pdmH1N1 strains and their reassortant derivatives (pdmH1huN2, huH3pdmN1) have been collected since November 2009. Sequencing of three pdmH1N1, 20 pdmH1huN2 and one huH3pdmN1 strains with conventional and next generation sequencing techniques and subsequent phylogenetic analyses with available sequence data revealed the emergence of five distinct reassortant genotypes in Europe. The most frequent genotype emerged at least three times independently, one of which (Papenburg lineage) established a stable infection chain and became more prevalent in pigs than pdmH1N1 in Germany.

DOI: 10.1016/j.vetmic.2013.09.024
PubMed: 24139631

Affiliations:

Allemagne

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000180
to stream Main, to step Curation: 000180

Le document en format XML

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<front><div type="abstract" xml:lang="en">The incursion of pandemic (H1N1) 2009 virus (pdmH1N1) into the German pig population was investigated in a serosurvey and by virological means between June 2009 and December 2012. Analysis of 23,116 pig sera from a total of 2,666 herds revealed 224 herds that reacted with pdmH1N1 but not with the prevalent avian-like H1N1 swine influenza virus. Sixty-six pdmH1N1 strains and their reassortant derivatives (pdmH1huN2, huH3pdmN1) have been collected since November 2009. Sequencing of three pdmH1N1, 20 pdmH1huN2 and one huH3pdmN1 strains with conventional and next generation sequencing techniques and subsequent phylogenetic analyses with available sequence data revealed the emergence of five distinct reassortant genotypes in Europe. The most frequent genotype emerged at least three times independently, one of which (Papenburg lineage) established a stable infection chain and became more prevalent in pigs than pdmH1N1 in Germany. </div>
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<Abstract><AbstractText>The incursion of pandemic (H1N1) 2009 virus (pdmH1N1) into the German pig population was investigated in a serosurvey and by virological means between June 2009 and December 2012. Analysis of 23,116 pig sera from a total of 2,666 herds revealed 224 herds that reacted with pdmH1N1 but not with the prevalent avian-like H1N1 swine influenza virus. Sixty-six pdmH1N1 strains and their reassortant derivatives (pdmH1huN2, huH3pdmN1) have been collected since November 2009. Sequencing of three pdmH1N1, 20 pdmH1huN2 and one huH3pdmN1 strains with conventional and next generation sequencing techniques and subsequent phylogenetic analyses with available sequence data revealed the emergence of five distinct reassortant genotypes in Europe. The most frequent genotype emerged at least three times independently, one of which (Papenburg lineage) established a stable infection chain and became more prevalent in pigs than pdmH1N1 in Germany. </AbstractText>
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<MeshHeading><DescriptorName UI="D013553" MajorTopicYN="N">Swine Diseases</DescriptorName>
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<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Next generation sequencing</Keyword>
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<Keyword MajorTopicYN="N">Reassortant</Keyword>
<Keyword MajorTopicYN="N">Serosurvey</Keyword>
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<affiliations><list><country><li>Allemagne</li>
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Reassortants of the pandemic (H1N1) 2009 virus and establishment of a novel porcine H1N2 influenza virus, lineage in Germany.

Reassortants of the pandemic (H1N1) 2009 virus and establishment of a novel porcine H1N2 influenza virus, lineage in Germany.

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